IL_7M4Z_027
3D structure
- PDB id
- 7M4Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- A. baumannii Ribosome-Eravacycline complex: 70S with hpf
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.92 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7M4Z_027 not in the Motif Atlas
- Homologous match to IL_5J7L_270
- Geometric discrepancy: 0.1103
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7M4Z|1|A|G|854
7M4Z|1|A|G|855
7M4Z|1|A|G|856
7M4Z|1|A|G|857
7M4Z|1|A|U|858
7M4Z|1|A|A|859
7M4Z|1|A|G|860
*
7M4Z|1|A|C|913
7M4Z|1|A|G|914
7M4Z|1|A|A|915
7M4Z|1|A|A|916
7M4Z|1|A|U|917
7M4Z|1|A|A|918
7M4Z|1|A|C|919
Current chains
- Chain A
- 23s ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L27
- Chain Y
- 50S ribosomal protein L30
Coloring options: