IL_7M4Z_038

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_038 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.2009

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7M4Z|1|A|G|1035
7M4Z|1|A|A|1036
7M4Z|1|A|A|1037
7M4Z|1|A|G|1038
*
7M4Z|1|A|C|1111
7M4Z|1|A|G|1112
7M4Z|1|A|G|1113
7M4Z|1|A|C|1114

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain U

50S ribosomal protein L25