IL_7M4Z_050

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GAAG*CAUGC

Length

9 nucleotides

Bulged bases

7M4Z|1|A|U|1557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_050 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2354

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7M4Z|1|A|G|1427
7M4Z|1|A|A|1428
7M4Z|1|A|A|1429
7M4Z|1|A|G|1430
*
7M4Z|1|A|C|1555
7M4Z|1|A|A|1556
7M4Z|1|A|U|1557
7M4Z|1|A|G|1558
7M4Z|1|A|C|1559

Current chains

Chain A

23s ribosomal RNA

Nearby chains