IL_7M4Z_064

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7M4Z|1|A|A|1797, 7M4Z|1|A|C|1812, 7M4Z|1|A|U|1816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_064 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1028

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7M4Z|1|A|U|1794
7M4Z|1|A|G|1795
7M4Z|1|A|C|1796
7M4Z|1|A|A|1797
7M4Z|1|A|A|1798
7M4Z|1|A|A|1799
7M4Z|1|A|C|1800
*
7M4Z|1|A|G|1809
7M4Z|1|A|G|1810
7M4Z|1|A|A|1811
7M4Z|1|A|C|1812
7M4Z|1|A|G|1813
7M4Z|1|A|U|1814
7M4Z|1|A|A|1815
7M4Z|1|A|U|1816
7M4Z|1|A|A|1817

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA