IL_7M4Z_074

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CGU(7MG)A*UCUG

Length

9 nucleotides

Bulged bases

7M4Z|1|A|U|2064

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_074 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2216

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7M4Z|1|A|C|2062
7M4Z|1|A|G|2063
7M4Z|1|A|U|2064
7M4Z|1|A|7MG|2065
7M4Z|1|A|A|2066
*
7M4Z|1|A|U|2437
7M4Z|1|A|C|2438
7M4Z|1|A|U|2439
7M4Z|1|A|G|2440

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15