IL_7M4Z_119

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GGACAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7M4Z|1|a|U|169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_119 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1477

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7M4Z|1|a|G|143
7M4Z|1|a|G|144
7M4Z|1|a|A|145
7M4Z|1|a|C|146
7M4Z|1|a|A|147
7M4Z|1|a|A|148
7M4Z|1|a|C|149
*
7M4Z|1|a|G|164
7M4Z|1|a|C|165
7M4Z|1|a|U|166
7M4Z|1|a|A|167
7M4Z|1|a|A|168
7M4Z|1|a|U|169
7M4Z|1|a|A|170
7M4Z|1|a|C|171

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20