IL_7M4Z_149

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

7M4Z|1|a|C|931, 7M4Z|1|a|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_149 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.564

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7M4Z|1|a|G|930
7M4Z|1|a|C|931
7M4Z|1|a|A|932
*
7M4Z|1|a|U|1377
7M4Z|1|a|U|1378
7M4Z|1|a|C|1379
7M4Z|1|a|C|1380
7M4Z|1|a|C|1381

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain v

Ribosomal subunit interface protein