IL_7M4Z_165

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_165 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1006

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7M4Z|1|a|C|1300
7M4Z|1|a|G|1301
7M4Z|1|a|G|1302
7M4Z|1|a|A|1303
7M4Z|1|a|U|1304
7M4Z|1|a|U|1305
*
7M4Z|1|a|A|1326
7M4Z|1|a|U|1327
7M4Z|1|a|G|1328
7M4Z|1|a|A|1329
7M4Z|1|a|A|1330
7M4Z|1|a|G|1331

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13