IL_7M4Z_171

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_171 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.1371

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

7M4Z|1|a|G|1413
7M4Z|1|a|G|1414
7M4Z|1|a|A|1415
7M4Z|1|a|G|1416
*
7M4Z|1|a|U|1478
7M4Z|1|a|G|1479
7M4Z|1|a|A|1480
7M4Z|1|a|C|1481

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA