IL_7M4Z_181

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

UGUAG*UGAGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_181 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.1944

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7M4Z|1|A|U|1469
7M4Z|1|A|G|1470
7M4Z|1|A|U|1471
7M4Z|1|A|A|1472
7M4Z|1|A|G|1473
*
7M4Z|1|A|U|1509
7M4Z|1|A|G|1510
7M4Z|1|A|A|1511
7M4Z|1|A|G|1512
7M4Z|1|A|A|1513

Current chains

Chain A

23s ribosomal RNA

Nearby chains