IL_7M4Z_183

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4Z_183 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1414

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7M4Z|1|A|U|1847
7M4Z|1|A|U|1848
7M4Z|1|A|A|1849
7M4Z|1|A|A|1850
7M4Z|1|A|U|1851
7M4Z|1|A|U|1852
7M4Z|1|A|G|1853
7M4Z|1|A|A|1854
7M4Z|1|A|U|1855
7M4Z|1|A|G|1856
*
7M4Z|1|A|U|1878
7M4Z|1|A|U|1879
7M4Z|1|A|G|1880
7M4Z|1|A|A|1881
7M4Z|1|A|U|1882
7M4Z|1|A|C|1883
7M4Z|1|A|G|1884
7M4Z|1|A|A|1885
7M4Z|1|A|A|1886
7M4Z|1|A|G|1887

Current chains

Chain A

23s ribosomal RNA

Nearby chains