IL_7M5D_043

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7M5D|1|1|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M5D_043 not in the Motif Atlas

Geometric match to IL_4V9F_048

Geometric discrepancy: 0.0914

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7M5D|1|1|C|1208
7M5D|1|1|U|1209
7M5D|1|1|G|1210
7M5D|1|1|C|1211
7M5D|1|1|G|1212
7M5D|1|1|A|1213
7M5D|1|1|A|1214
7M5D|1|1|G|1215
*
7M5D|1|1|U|1234
7M5D|1|1|G|1235
7M5D|1|1|G|1236
7M5D|1|1|A|1237
7M5D|1|1|G|1238

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20