IL_7MD7_170
3D structure
- PDB id
- 7MD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GU(5MC)AC*GAAGUC
- Length
- 11 nucleotides
- Bulged bases
- 7MD7|1|1a|A|1493
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MD7_170 not in the Motif Atlas
- Geometric match to IL_4WF9_084
- Geometric discrepancy: 0.3834
- The information below is about IL_4WF9_084
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
7MD7|1|1a|G|1405
7MD7|1|1a|U|1406
7MD7|1|1a|5MC|1407
7MD7|1|1a|A|1408
7MD7|1|1a|C|1409
*
7MD7|1|1a|G|1491
7MD7|1|1a|A|1492
7MD7|1|1a|A|1493
7MD7|1|1a|G|1494
7MD7|1|1a|U|1495
7MD7|1|1a|C|1496
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1l
- 30S ribosomal protein S12
- Chain 1y
- Ribosome-associated inhibitor A
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