IL_7MDZ_035
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 7MDZ|1|5|G|748, 7MDZ|1|5|C|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MDZ_035 not in the Motif Atlas
- Geometric match to IL_5TBW_020
- Geometric discrepancy: 0.2643
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7MDZ|1|5|G|745
7MDZ|1|5|A|746
7MDZ|1|5|A|747
7MDZ|1|5|G|748
7MDZ|1|5|G|749
7MDZ|1|5|U|750
7MDZ|1|5|G|751
7MDZ|1|5|G|752
*
7MDZ|1|5|U|911
7MDZ|1|5|G|912
7MDZ|1|5|U|913
7MDZ|1|5|U|914
7MDZ|1|5|A|915
7MDZ|1|5|C|916
7MDZ|1|5|A|917
7MDZ|1|5|G|918
7MDZ|1|5|C|919
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain M
- 60S ribosomal protein L14
- Chain S
- 60S ribosomal protein L18a
Coloring options: