IL_7MDZ_092

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_092 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2203

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7MDZ|1|5|C|2589
7MDZ|1|5|G|2590
7MDZ|1|5|A|2591
7MDZ|1|5|U|2592
7MDZ|1|5|C|2593
*
7MDZ|1|5|G|2752
7MDZ|1|5|G|2753
7MDZ|1|5|G|2754
7MDZ|1|5|A|2755
7MDZ|1|5|G|2756

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain Z

60S ribosomal protein L27

Chain g

60S ribosomal protein L34