IL_7MDZ_099

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_099 not in the Motif Atlas

Homologous match to IL_5TBW_074

Geometric discrepancy: 0.1154

The information below is about IL_5TBW_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7MDZ|1|5|A|2832
7MDZ|1|5|A|2833
7MDZ|1|5|C|2834
7MDZ|1|5|A|2835
7MDZ|1|5|A|2836
7MDZ|1|5|U|2837
7MDZ|1|5|G|2838
*
7MDZ|1|5|C|3850
7MDZ|1|5|U|3851
7MDZ|1|5|A|3852
7MDZ|1|5|U|3853

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31