IL_7MDZ_171

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCA*UAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_171 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2194

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7MDZ|1|9|A|22
7MDZ|1|9|G|23
7MDZ|1|9|C|24
7MDZ|1|9|A|25
*
7MDZ|1|9|U|649
7MDZ|1|9|A|650
7MDZ|1|9|U|651
7MDZ|1|9|U|652

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

uS4

Chain XX

uS12