IL_7MDZ_204

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

7MDZ|1|9|A|628, 7MDZ|1|9|U|630, 7MDZ|1|9|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_204 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.2068

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7MDZ|1|9|G|611
7MDZ|1|9|U|612
7MDZ|1|9|G|613
7MDZ|1|9|C|614
7MDZ|1|9|C|615
7MDZ|1|9|A|616
7MDZ|1|9|G|617
*
7MDZ|1|9|C|624
7MDZ|1|9|G|625
7MDZ|1|9|G|626
7MDZ|1|9|U|627
7MDZ|1|9|A|628
7MDZ|1|9|A|629
7MDZ|1|9|U|630
7MDZ|1|9|U|631
7MDZ|1|9|C|632

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 6

mRNA

Chain DD

Ribosomal protein S3

Chain XX

uS12

Chain ee

eS30