IL_7MDZ_206

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_206 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1759

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

7MDZ|1|9|G|665
7MDZ|1|9|U|666
7MDZ|1|9|U|667
7MDZ|1|9|A|668
7MDZ|1|9|A|669
7MDZ|1|9|A|670
7MDZ|1|9|A|671
*
7MDZ|1|9|U|1161
7MDZ|1|9|C|1162

Current chains

Chain 9

18S rRNA

Nearby chains

Chain XX

uS12

Chain aa

40S ribosomal protein S26