3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUUAAAA*UC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MDZ_206 not in the Motif Atlas
Homologous match to IL_4V88_416
Geometric discrepancy: 0.1759
The information below is about IL_4V88_416
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38186.3
Basepair signature
cWW-L-cWW-R-L-R
Number of instances in this motif group
5

Unit IDs

7MDZ|1|9|G|665
7MDZ|1|9|U|666
7MDZ|1|9|U|667
7MDZ|1|9|A|668
7MDZ|1|9|A|669
7MDZ|1|9|A|670
7MDZ|1|9|A|671
*
7MDZ|1|9|U|1161
7MDZ|1|9|C|1162

Current chains

Chain 9
18S rRNA

Nearby chains

Chain XX
uS12
Chain aa
40S ribosomal protein S26

Coloring options:


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