IL_7MDZ_219

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_219 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.1389

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7MDZ|1|9|G|928
7MDZ|1|9|G|929
7MDZ|1|9|C|930
7MDZ|1|9|C|931
*
7MDZ|1|9|G|1010
7MDZ|1|9|A|1011
7MDZ|1|9|A|1012
7MDZ|1|9|U|1013

Current chains

Chain 9

18S rRNA

Nearby chains

Chain BB

eS1

Chain NN

uS15

Chain bb

eS27