IL_7MDZ_280
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 7MDZ|1|9|C|1331, 7MDZ|1|9|U|1494, 7MDZ|1|9|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MDZ_280 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1484
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86012.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
7MDZ|1|9|U|1329
7MDZ|1|9|G|1330
7MDZ|1|9|C|1331
7MDZ|1|9|A|1332
7MDZ|1|9|U|1333
7MDZ|1|9|G|1334
7MDZ|1|9|G|1335
*
7MDZ|1|9|U|1492
7MDZ|1|9|C|1493
7MDZ|1|9|U|1494
7MDZ|1|9|G|1495
7MDZ|1|9|U|1496
7MDZ|1|9|G|1497
7MDZ|1|9|A|1498
7MDZ|1|9|U|1499
7MDZ|1|9|G|1500
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 6
- mRNA
- Chain DD
- Ribosomal protein S3
- Chain KK
- S10_plectin domain-containing protein
- Chain UU
- uS10
- Chain dd
- eS29
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