IL_7MPI_032

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_032 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.0772

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7MPI|1|A1|U|834
7MPI|1|A1|G|835
7MPI|1|A1|A|836
7MPI|1|A1|A|837
7MPI|1|A1|G|838
*
7MPI|1|A1|U|855
7MPI|1|A1|G|856
7MPI|1|A1|G|857
7MPI|1|A1|A|858
7MPI|1|A1|G|859

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain AR

60S ribosomal protein L19-A

Chain Ap

60S ribosomal protein L43-A