IL_7MPI_052

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GACACCACAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

7MPI|1|A1|C|1196, 7MPI|1|A1|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_052 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.0862

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7MPI|1|A1|G|1194
7MPI|1|A1|A|1195
7MPI|1|A1|C|1196
7MPI|1|A1|A|1197
7MPI|1|A1|C|1198
7MPI|1|A1|C|1199
7MPI|1|A1|A|1200
7MPI|1|A1|C|1201
7MPI|1|A1|A|1202
7MPI|1|A1|A|1203
7MPI|1|A1|A|1204
7MPI|1|A1|A|1205
*
7MPI|1|A1|U|1299
7MPI|1|A1|G|1300
7MPI|1|A1|A|1301
7MPI|1|A1|A|1302
7MPI|1|A1|A|1303
7MPI|1|A1|A|1304
7MPI|1|A1|U|1305
7MPI|1|A1|G|1306
7MPI|1|A1|G|1307
7MPI|1|A1|A|1308
7MPI|1|A1|U|1309
7MPI|1|A1|G|1310
7MPI|1|A1|G|1311
7MPI|1|A1|C|1312
7MPI|1|A1|G|1313
7MPI|1|A1|C|1314

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A3

5S ribosomal RNA; 5S rRNA

Chain AB

60S ribosomal protein L3

Chain AF

60S ribosomal protein L7-A

Chain AI

60S ribosomal protein L10

Chain AO

60S ribosomal protein L16-A

Chain Af

60S ribosomal protein L33-A

Chain Am

60S ribosomal protein L40-A