IL_7MPI_061

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

7MPI|1|A1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_061 not in the Motif Atlas

Geometric match to IL_7RQB_051

Geometric discrepancy: 0.1282

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

7MPI|1|A1|U|1501
7MPI|1|A1|C|1502
7MPI|1|A1|A|1503
7MPI|1|A1|A|1504
7MPI|1|A1|C|1505
*
7MPI|1|A1|G|1513
7MPI|1|A1|G|1514
7MPI|1|A1|A|1515

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L17-A

Chain AR

60S ribosomal protein L19-A

Chain Al

60S ribosomal protein L39