3D structure

PDB id
7MPI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from cbf5-D95A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.05 Å

Loop

Sequence
AAG*CCU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPI_074 not in the Motif Atlas
Geometric match to IL_4WF9_063
Geometric discrepancy: 0.0891
The information below is about IL_4WF9_063
Detailed Annotation
Isolated tWW turn
Broad Annotation
No text annotation
Motif group
IL_67095.2
Basepair signature
cWW-tWW-cWW
Number of instances in this motif group
8

Unit IDs

7MPI|1|A1|A|1895
7MPI|1|A1|A|1896
7MPI|1|A1|G|1897
*
7MPI|1|A1|C|2338
7MPI|1|A1|C|2339
7MPI|1|A1|U|2340

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AB
60S ribosomal protein L3
Chain AV
60S ribosomal protein L23-A
Chain AW
60S ribosomal protein L24-A

Coloring options:


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