IL_7MPI_086

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

7MPI|1|A1|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_086 not in the Motif Atlas

Geometric match to IL_5TBW_087

Geometric discrepancy: 0.3713

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7MPI|1|A1|G|2206
7MPI|1|A1|A|2207
7MPI|1|A1|A|2208
7MPI|1|A1|U|2209
7MPI|1|A1|G|2210
*
7MPI|1|A1|C|2235
7MPI|1|A1|G|2236
7MPI|1|A1|C|2237

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA