3D structure

PDB id
7MPI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from cbf5-D95A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.05 Å

Loop

Sequence
UACGAAUAAG*CGCUGAA
Length
17 nucleotides
Bulged bases
7MPI|1|A1|A|3180, 7MPI|1|A1|A|3186, 7MPI|1|A1|U|3207, 7MPI|1|A1|A|3209
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPI_126 not in the Motif Atlas
Geometric match to IL_5TBW_124
Geometric discrepancy: 0.077
The information below is about IL_5TBW_124
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_15174.1
Basepair signature
cWW-L-R-L-R-L-cWW-cSS-cWW-L
Number of instances in this motif group
2

Unit IDs

7MPI|1|A1|U|3179
7MPI|1|A1|A|3180
7MPI|1|A1|C|3181
7MPI|1|A1|G|3182
7MPI|1|A1|A|3183
7MPI|1|A1|A|3184
7MPI|1|A1|U|3185
7MPI|1|A1|A|3186
7MPI|1|A1|A|3187
7MPI|1|A1|G|3188
*
7MPI|1|A1|C|3204
7MPI|1|A1|G|3205
7MPI|1|A1|C|3206
7MPI|1|A1|U|3207
7MPI|1|A1|G|3208
7MPI|1|A1|A|3209
7MPI|1|A1|A|3210

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AE
60S ribosomal protein L6-A
Chain AH
60S ribosomal protein L9-A
Chain AM
60S ribosomal protein L14-A
Chain AO
60S ribosomal protein L16-A
Chain AS
60S ribosomal protein L20-A
Chain Af
60S ribosomal protein L33-A

Coloring options:


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