IL_7MPI_130

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_130 not in the Motif Atlas

Geometric match to IL_3R2D_002

Geometric discrepancy: 0.1268

The information below is about IL_3R2D_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7MPI|1|A1|C|3235
7MPI|1|A1|U|3236
7MPI|1|A1|U|3237
7MPI|1|A1|G|3238
*
7MPI|1|A1|C|3249
7MPI|1|A1|U|3250
7MPI|1|A1|U|3251
7MPI|1|A1|G|3252

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AO

60S ribosomal protein L16-A