IL_7MPI_137

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_137 not in the Motif Atlas

Geometric match to IL_5TBW_135

Geometric discrepancy: 0.2147

The information below is about IL_5TBW_135

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7MPI|1|A1|A|3342
7MPI|1|A1|G|3343
7MPI|1|A1|A|3344
7MPI|1|A1|G|3345
*
7MPI|1|A1|C|3360
7MPI|1|A1|G|3361
7MPI|1|A1|A|3362
7MPI|1|A1|U|3363

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AW

60S ribosomal protein L24-A

Chain BI

40S ribosomal protein S8-A