IL_7MPI_160

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7MPI|1|B5|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_160 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1275

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7MPI|1|B5|G|143
7MPI|1|B5|U|144
7MPI|1|B5|A|145
7MPI|1|B5|U|146
7MPI|1|B5|A|147
7MPI|1|B5|A|148
7MPI|1|B5|C|149
*
7MPI|1|B5|G|165
7MPI|1|B5|C|166
7MPI|1|B5|U|167
7MPI|1|B5|A|168
7MPI|1|B5|A|169
7MPI|1|B5|U|170
7MPI|1|B5|A|171
7MPI|1|B5|C|172

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A

Chain BY

40S ribosomal protein S24-A