IL_7MPI_169

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

7MPI|1|B5|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_169 not in the Motif Atlas

Geometric match to IL_4V88_404

Geometric discrepancy: 0.0863

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7MPI|1|B5|G|363
7MPI|1|B5|G|364
7MPI|1|B5|G|365
*
7MPI|1|B5|C|376
7MPI|1|B5|G|377
7MPI|1|B5|A|378
7MPI|1|B5|U|379
7MPI|1|B5|U|380
7MPI|1|B5|C|381

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A