IL_7MPI_180

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_180 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1367

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7MPI|1|B5|G|616
7MPI|1|B5|U|617
7MPI|1|B5|U|618
7MPI|1|B5|A2M|619
7MPI|1|B5|A|620
7MPI|1|B5|A|621
7MPI|1|B5|A|622
*
7MPI|1|B5|U|1104
7MPI|1|B5|C|1105

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BC

40S ribosomal protein S2

Chain BX

40S ribosomal protein S23-A

Chain Ba

40S ribosomal protein S26-B