IL_7MPI_183

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_183 not in the Motif Atlas

Geometric match to IL_5UNE_004

Geometric discrepancy: 0.1828

The information below is about IL_5UNE_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7MPI|1|B5|C|646
7MPI|1|B5|G|647
7MPI|1|B5|G|648
*
7MPI|1|B5|C|686
7MPI|1|B5|G|687
7MPI|1|B5|G|688

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BW

40S ribosomal protein S22-A