IL_7MPI_200

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_200 not in the Motif Atlas

Geometric match to IL_4LFB_034

Geometric discrepancy: 0.0904

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

7MPI|1|B5|G|1111
7MPI|1|B5|G|1112
7MPI|1|B5|A|1113
7MPI|1|B5|G|1114
7MPI|1|B5|U|1115
7MPI|1|B5|A|1116
7MPI|1|B5|U|1117
7MPI|1|B5|G|1118
*
7MPI|1|B5|U|1129
7MPI|1|B5|G|1130
7MPI|1|B5|A|1131
7MPI|1|B5|A|1132
7MPI|1|B5|A|1133
7MPI|1|B5|C|1134

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain An

60S ribosomal protein L41-A

Chain BX

40S ribosomal protein S23-A