IL_7MPI_228
3D structure
- PDB id
- 7MPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MPI_228 not in the Motif Atlas
- Geometric match to IL_4V88_468
- Geometric discrepancy: 0.1112
- The information below is about IL_4V88_468
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
7MPI|1|B5|C|1653
7MPI|1|B5|G|1654
7MPI|1|B5|A|1655
7MPI|1|B5|U|1656
*
7MPI|1|B5|A|1744
7MPI|1|B5|G|1745
7MPI|1|B5|A|1746
7MPI|1|B5|G|1747
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AV
- 60S ribosomal protein L23-A
- Chain An
- 60S ribosomal protein L41-A
- Chain BX
- 40S ribosomal protein S23-A
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