IL_7MPI_234

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_234 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.1498

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7MPI|1|B5|A|1678
7MPI|1|B5|G|1679
7MPI|1|B5|G|1680
7MPI|1|B5|A|1681
7MPI|1|B5|U|1682
*
7MPI|1|B5|A|1719
7MPI|1|B5|G|1720
7MPI|1|B5|A|1721
7MPI|1|B5|A|1722
7MPI|1|B5|U|1723

Current chains

Chain B5

18S rRNA

Nearby chains

Chain AW

60S ribosomal protein L24-A

Chain BG

40S ribosomal protein S6-A

Chain BI

40S ribosomal protein S8-A