IL_7MPI_243

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

C(5MC)A(A2M)(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

7MPI|1|A1|A2M|2281, 7MPI|1|A1|C|2287, 7MPI|1|A1|C|2306

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_243 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1013

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7MPI|1|A1|C|2277
7MPI|1|A1|5MC|2278
7MPI|1|A1|A|2279
7MPI|1|A1|A2M|2280
7MPI|1|A1|A2M|2281
7MPI|1|A1|U|2282
7MPI|1|A1|G|2283
7MPI|1|A1|C|2284
7MPI|1|A1|C|2285
7MPI|1|A1|U|2286
7MPI|1|A1|C|2287
7MPI|1|A1|OMG|2288
*
7MPI|1|A1|C|2304
7MPI|1|A1|G|2305
7MPI|1|A1|C|2306
7MPI|1|A1|G|2307

Current chains

Chain A1

25S rRNA

Nearby chains

Chain An

60S ribosomal protein L41-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA