IL_7MPI_254

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

G(OMU)G*CC

Length

5 nucleotides

Bulged bases

7MPI|1|B5|OMU|1269

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPI_254 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.1018

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

7MPI|1|B5|G|1268
7MPI|1|B5|OMU|1269
7MPI|1|B5|G|1270
*
7MPI|1|B5|C|1440
7MPI|1|B5|C|1441

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BK

40S ribosomal protein S10-A

Chain Bd

40S ribosomal protein S29-A