3D structure

PDB id
7MPI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from cbf5-D95A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.05 Å

Loop

Sequence
GAG*CUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPI_257 not in the Motif Atlas
Geometric match to IL_4KQ0_004
Geometric discrepancy: 0.1621
The information below is about IL_4KQ0_004
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

7MPI|1|B5|G|1546
7MPI|1|B5|A|1547
7MPI|1|B5|G|1548
*
7MPI|1|B5|C|1563
7MPI|1|B5|U|1564
7MPI|1|B5|C|1565

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BP
40S ribosomal protein S15
Chain BS
40S ribosomal protein S18-A
Chain BT
40S ribosomal protein S19-A

Coloring options:


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