3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GAAUGUAG*UAUUAUAGC
Length
17 nucleotides
Bulged bases
7MPJ|1|A1|U|534, 7MPJ|1|A1|U|558
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_021 not in the Motif Atlas
Geometric match to IL_5TBW_020
Geometric discrepancy: 0.0889
The information below is about IL_5TBW_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07703.1
Basepair signature
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

7MPJ|1|A1|G|531
7MPJ|1|A1|A|532
7MPJ|1|A1|A|533
7MPJ|1|A1|U|534
7MPJ|1|A1|G|535
7MPJ|1|A1|U|536
7MPJ|1|A1|A|537
7MPJ|1|A1|G|538
*
7MPJ|1|A1|U|553
7MPJ|1|A1|A|554
7MPJ|1|A1|U|555
7MPJ|1|A1|U|556
7MPJ|1|A1|A|557
7MPJ|1|A1|U|558
7MPJ|1|A1|A|559
7MPJ|1|A1|G|560
7MPJ|1|A1|C|561

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AM
60S ribosomal protein L14-A
Chain AS
60S ribosomal protein L20-A

Coloring options:


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