3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CUCAUCAG*CUCAAG
Length
14 nucleotides
Bulged bases
7MPJ|1|A1|U|1191, 7MPJ|1|A1|C|1192, 7MPJ|1|A1|C|1316, 7MPJ|1|A1|A|1318
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_050 not in the Motif Atlas
Homologous match to IL_8C3A_054
Geometric discrepancy: 0.1004
The information below is about IL_8C3A_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_27086.1
Basepair signature
cWW-tWW-L-tWW-cWW-L
Number of instances in this motif group
2

Unit IDs

7MPJ|1|A1|C|1187
7MPJ|1|A1|U|1188
7MPJ|1|A1|C|1189
7MPJ|1|A1|A|1190
7MPJ|1|A1|U|1191
7MPJ|1|A1|C|1192
7MPJ|1|A1|A|1193
7MPJ|1|A1|G|1194
*
7MPJ|1|A1|C|1314
7MPJ|1|A1|U|1315
7MPJ|1|A1|C|1316
7MPJ|1|A1|A|1317
7MPJ|1|A1|A|1318
7MPJ|1|A1|G|1319

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AH
60S ribosomal protein L9-A
Chain AM
60S ribosomal protein L14-A
Chain AO
60S ribosomal protein L16-A
Chain AS
60S ribosomal protein L20-A
Chain Am
60S ribosomal protein L40-A

Coloring options:


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