IL_7MPJ_117

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

7MPJ|1|A1|A|3142, 7MPJ|1|A1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_117 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.0928

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7MPJ|1|A1|C|3004
7MPJ|1|A1|A|3005
7MPJ|1|A1|A|3006
7MPJ|1|A1|U|3007
*
7MPJ|1|A1|A|3139
7MPJ|1|A1|G|3140
7MPJ|1|A1|A|3141
7MPJ|1|A1|A|3142
7MPJ|1|A1|C|3143
7MPJ|1|A1|G|3144

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L16-A