IL_7MPJ_159

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

7MPJ|1|B5|C|114, 7MPJ|1|B5|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_159 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.094

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7MPJ|1|B5|U|113
7MPJ|1|B5|C|114
7MPJ|1|B5|G|115
7MPJ|1|B5|U|116
*
7MPJ|1|B5|A|300
7MPJ|1|B5|A|301

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BI

40S ribosomal protein S8-A

Chain BL

40S ribosomal protein S11-A