IL_7MPJ_169
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 7MPJ|1|B5|U|313, 7MPJ|1|B5|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MPJ_169 not in the Motif Atlas
- Geometric match to IL_4V88_402
- Geometric discrepancy: 0.0833
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
7MPJ|1|B5|U|311
7MPJ|1|B5|A|312
7MPJ|1|B5|U|313
7MPJ|1|B5|C|314
7MPJ|1|B5|A|315
7MPJ|1|B5|A|316
*
7MPJ|1|B5|U|348
7MPJ|1|B5|U|349
7MPJ|1|B5|U|350
7MPJ|1|B5|C|351
7MPJ|1|B5|A|352
7MPJ|1|B5|A|353
7MPJ|1|B5|C|354
7MPJ|1|B5|G|355
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BI
- 40S ribosomal protein S8-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BX
- 40S ribosomal protein S23-A
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