IL_7MPJ_182

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_182 not in the Motif Atlas

Geometric match to IL_4V88_416

Geometric discrepancy: 0.1051

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

7MPJ|1|B5|G|616
7MPJ|1|B5|U|617
7MPJ|1|B5|U|618
7MPJ|1|B5|A2M|619
7MPJ|1|B5|A|620
7MPJ|1|B5|A|621
7MPJ|1|B5|A|622
*
7MPJ|1|B5|U|1104
7MPJ|1|B5|C|1105

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BX

40S ribosomal protein S23-A

Chain Ba

40S ribosomal protein S26-A