3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CGUAG*UCAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_184 not in the Motif Atlas
Geometric match to IL_4V88_418
Geometric discrepancy: 0.0853
The information below is about IL_4V88_418
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.4
Basepair signature
cWW-R-L-tHS-tHW-cWW
Number of instances in this motif group
18

Unit IDs

7MPJ|1|B5|C|627
7MPJ|1|B5|G|628
7MPJ|1|B5|U|629
7MPJ|1|B5|A|630
7MPJ|1|B5|G|631
*
7MPJ|1|B5|U|968
7MPJ|1|B5|C|969
7MPJ|1|B5|A|970
7MPJ|1|B5|A|971
7MPJ|1|B5|G|972

Current chains

Chain B5
18S rRNA

Nearby chains

Chain A1
Large subunit ribosomal RNA; LSU rRNA
Chain BL
40S ribosomal protein S11-A
Chain BN
40S ribosomal protein S13
Chain BW
40S ribosomal protein S22-A
Chain BX
40S ribosomal protein S23-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1539 s