3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CGAAG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_199 not in the Motif Atlas
Geometric match to IL_4V88_436
Geometric discrepancy: 0.1571
The information below is about IL_4V88_436
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.4
Basepair signature
cWW-R-L-tHS-tHW-cWW
Number of instances in this motif group
18

Unit IDs

7MPJ|1|B5|C|990
7MPJ|1|B5|G|991
7MPJ|1|B5|A|992
7MPJ|1|B5|A|993
7MPJ|1|B5|G|994
*
7MPJ|1|B5|C|1010
7MPJ|1|B5|G|1011
7MPJ|1|B5|U|1012
7MPJ|1|B5|A|1013
7MPJ|1|B5|G|1014

Current chains

Chain B5
18S rRNA

Nearby chains

Chain A1
Large subunit ribosomal RNA; LSU rRNA
Chain AA
60S ribosomal protein L2-A
Chain An
60S ribosomal protein L41-A
Chain BO
40S ribosomal protein S14-A
Chain Ba
40S ribosomal protein S26-A

Coloring options:


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