IL_7MQ8_016
3D structure
- PDB id
- 7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 7MQ8|1|L1|C|65, 7MQ8|1|L1|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQ8_016 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.1867
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7MQ8|1|L1|U|63
7MQ8|1|L1|A|64
7MQ8|1|L1|C|65
7MQ8|1|L1|G|66
7MQ8|1|L1|C|67
7MQ8|1|L1|A|68
*
7MQ8|1|L1|U|81
7MQ8|1|L1|G|82
7MQ8|1|L1|A|83
7MQ8|1|L1|A|84
7MQ8|1|L1|A|85
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L6
- 40S ribosomal protein S6
- Chain SP
- Small subunit processome component 20 homolog
Coloring options: