IL_7MQ8_021
3D structure
- PDB id
- 7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 7MQ8|1|L1|U|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQ8_021 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.1762
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
7MQ8|1|L1|G|145
7MQ8|1|L1|G|146
7MQ8|1|L1|A|147
7MQ8|1|L1|U|148
7MQ8|1|L1|A|149
7MQ8|1|L1|A|150
7MQ8|1|L1|C|151
*
7MQ8|1|L1|G|167
7MQ8|1|L1|C|168
7MQ8|1|L1|U|169
7MQ8|1|L1|A|170
7MQ8|1|L1|A|171
7MQ8|1|L1|U|172
7MQ8|1|L1|A|173
7MQ8|1|L1|C|174
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L6
- 40S ribosomal protein S6
- Chain SP
- Small subunit processome component 20 homolog
Coloring options: