IL_7MQ8_038

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQ8_038 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.3004

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

7MQ8|1|L1|C|459
7MQ8|1|L1|A|460
7MQ8|1|L1|U|461
*
7MQ8|1|L1|A|468
7MQ8|1|L1|A|469
7MQ8|1|L1|G|470

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L6

40S ribosomal protein S6

Chain NJ

RNA cytidine acetyltransferase

Chain SI

Ribosome biogenesis protein BMS1 homolog